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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_107040475_107067473_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
107040475 - 107067473
Intron Length:
26999

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTGGGG
5'SS Class:
major
3'SS Sequence:
TCTGCACTCTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTGCAC
U12 Branch Point Sequence:
CCTTTCTGCACT
Flanking Amino Acid:
KPAQSRGAPVSVYQIVVEEE
Intron Amino Acid Position:
617

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67
0.4
1.1
51.7
45.2
Major BPS
52.5
0.06
1.4
65.3
41.6
Major PPT
69.5
0.44
0.8
66.5
34.6
Minor 5ss
27.6
-2.6
3.6
38.4
46.6
Minor BPS
52.2
0.15
2
71.74
45.4

Associated Gene:

Gene:
PTPRM
Ensembl Gene ID:
ENSAPLG00000008518
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020518
106782350 - 107251640
469291
ENSAPLT00000044365
106782350 - 107251640
469291
ENSAPLT00000009028
106782350 - 107251640
469291
ENSAPLT00000038143
106782350 - 107251640
469291
ENSAPLT00000033580
106782350 - 107251640
469291
ENSAPLT00000029550
106782350 - 107251640
469291
ENSAPLT00000045800
106782350 - 107251640
469291