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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_107096084_107148679_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
107096084 - 107148679
Intron Length:
52596

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCT|GTAAGTAAC
5'SS Class:
major
3'SS Sequence:
TTCATTTCTTAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
TTTTTCTCAACA
Flanking Amino Acid:
RRSYHSYTYYLKLAKKRKET
Intron Amino Acid Position:
775

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.1
0.62
1.1
74.7
35.4
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
74.9
0.56
1
79.3
32.9
Minor 5ss
38.9
-1.2
2.8
55.7
41.6
Minor BPS
78.1
0.88
1.4
87.43
30.3

Associated Gene:

Gene:
PTPRM
Ensembl Gene ID:
ENSAPLG00000008518
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009028
106782350 - 107251640
469291
ENSAPLT00000045800
106782350 - 107251640
469291
ENSAPLT00000044365
106782350 - 107251640
469291
ENSAPLT00000038143
106782350 - 107251640
469291
ENSAPLT00000033580
106782350 - 107251640
469291