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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_107148832_107151361_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
107148832 - 107151361
Intron Length:
2530

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAAGTCTT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATCAC
U12 Branch Point Sequence:
CTGTCTCTAACT
Flanking Amino Acid:
FMDTHNLNGRSVSSPSSFTM
Intron Amino Acid Position:
826

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.2
0.83
1
83.8
34.5
Major BPS
69.5
0.49
1
71.8
33.3
Major PPT
96.4
1.04
0.5
95.9
14.1
Minor 5ss
42.6
-0.8
3.1
63.9
40.4
Minor BPS
65.3
0.56
1.7
80.2
42

Associated Gene:

Gene:
PTPRM
Ensembl Gene ID:
ENSAPLG00000008518
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038143
106782350 - 107251640
469291
ENSAPLT00000033580
106782350 - 107251640
469291
ENSAPLT00000029550
106782350 - 107251640
469291
ENSAPLT00000045800
106782350 - 107251640
469291
ENSAPLT00000009028
106782350 - 107251640
469291
ENSAPLT00000044365
106782350 - 107251640
469291