Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_107148832_107156635_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

107148832 - 107156635

Intron Length:

7804

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAT|GTAAGTCTT

5'SS Class:

strong_major

3'SS Sequence:

ACTCTTTTCCTAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TAAAAAT

U12 Branch Point Sequence:

AGTACATTATGA

Flanking Amino Acid:

FMDTHNLNGRYETHTMVSDT

Intron Amino Acid Position:

841

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.2

0.83

83.8

34.5

Major BPS

62.8

0.32

1.1

67.9

34.4

Major PPT

76.1

0.59

0.8

69.2

36.3

Minor 5ss

42.6

-0.8

3.1

63.9

40.4

Minor BPS

44.7

-0.4

2.1

56.81

41.8

Associated Gene:

Gene:

PTPRM

Ensembl Gene ID:

ENSAPLG00000008518

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000020518

106782350 - 107251640

469291