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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_107151689_107156635_F

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
107151689 - 107156635
Intron Length:
4947

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGAACA
5'SS Class:
strong_major
3'SS Sequence:
ACTCTTTTCCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAAAAAT
U12 Branch Point Sequence:
AGTACATTATGA
Flanking Amino Acid:
PDPFVPTAILDETHTMVSDT
Intron Amino Acid Position:
885

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.9
0.89
0.8
79.5
28.2
Major BPS
62.8
0.32
1.1
67.9
34.4
Major PPT
76.1
0.59
0.8
69.2
36.3
Minor 5ss
28.3
-2.5
2.7
32.3
41.9
Minor BPS
44.7
-0.4
2.1
56.81
41.8

Associated Gene:

Gene:
PTPRM
Ensembl Gene ID:
ENSAPLG00000008518
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033580
106782350 - 107251640
469291