About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_107235461_107235753_F

Intron Information:

Intron Rank:
26
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
107235461 - 107235753
Intron Length:
293

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGCAGA
5'SS Class:
major
3'SS Sequence:
TTCTTTTATTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TGAACATTAACT
Flanking Amino Acid:
PNAGPLVVHCSAGAGRTGCF
Intron Amino Acid Position:
1117

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
68.9
43.8
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
84.5
0.78
0.8
85.3
28.3
Minor 5ss
37.4
-1.4
3.1
48.6
47.2
Minor BPS
66.3
0.59
1.7
80.46
40.3

Associated Gene:

Gene:
PTPRM
Ensembl Gene ID:
ENSAPLG00000008518
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009028
106782350 - 107251640
469291
ENSAPLT00000038143
106782350 - 107251640
469291
ENSAPLT00000033580
106782350 - 107251640
469291
ENSAPLT00000029550
106782350 - 107251640
469291
ENSAPLT00000045800
106782350 - 107251640
469291
ENSAPLT00000020518
106782350 - 107251640
469291
ENSAPLT00000044365
106782350 - 107251640
469291