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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_107242799_107244601_F

Intron Information:

Intron Rank:
31
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
107242799 - 107244601
Intron Length:
1803

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGGATG
5'SS Class:
strong_major
3'SS Sequence:
TGAATCCCTACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCTGAA
U12 Branch Point Sequence:
GTTCCCTGAATC
Flanking Amino Acid:
RIFRIYNAARPQDGYRMVQQ
Intron Amino Acid Position:
1357

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.74
1
73.4
43.3
Major BPS
57.2
0.18
1.1
48.9
36.6
Major PPT
70.5
0.46
1
62.3
39.6
Minor 5ss
35.4
-1.7
3.2
40.5
45.5
Minor BPS
67.5
0.53
1.4
74.09
36

Associated Gene:

Gene:
PTPRM
Ensembl Gene ID:
ENSAPLG00000008518
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029550
106782350 - 107251640
469291
ENSAPLT00000045800
106782350 - 107251640
469291
ENSAPLT00000020518
106782350 - 107251640
469291
ENSAPLT00000044365
106782350 - 107251640
469291
ENSAPLT00000009028
106782350 - 107251640
469291
ENSAPLT00000038143
106782350 - 107251640
469291
ENSAPLT00000033580
106782350 - 107251640
469291