About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_107244766_107247082_F

Intron Information:

Intron Rank:
32
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
107244766 - 107247082
Intron Length:
2317

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTT|GTAAGTACT
5'SS Class:
major
3'SS Sequence:
ACTTTTATTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TCAATTGTAACT
Flanking Amino Acid:
GGEGRTVVHCLNGGGRSGTF
Intron Amino Acid Position:
1411

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.2
0.67
1
79.2
33.9
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
79.3
0.66
0.8
74.6
34.3
Minor 5ss
40.9
-1
2.8
58.9
39.3
Minor BPS
49.3
0.02
2
68.46
42.8

Associated Gene:

Gene:
PTPRM
Ensembl Gene ID:
ENSAPLG00000008518
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029550
106782350 - 107251640
469291
ENSAPLT00000045800
106782350 - 107251640
469291
ENSAPLT00000020518
106782350 - 107251640
469291
ENSAPLT00000044365
106782350 - 107251640
469291
ENSAPLT00000009028
106782350 - 107251640
469291
ENSAPLT00000038143
106782350 - 107251640
469291
ENSAPLT00000033580
106782350 - 107251640
469291