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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_107289856_107290715_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
107289856 - 107290715
Intron Length:
860

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGGCTG
5'SS Class:
major
3'SS Sequence:
TATTCTTTCCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TTGTTCTTATTC
Flanking Amino Acid:
HLLRGLQVHRGSFKNPNLIE
Intron Amino Acid Position:
133

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
1.1
64.3
47.1
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
80
0.68
0.8
73.6
36.6
Minor 5ss
33.9
-1.8
3.4
39.3
46
Minor BPS
65.8
0.48
1.6
73.37
38.4

Associated Gene:

Gene:
RAB12
Ensembl Gene ID:
ENSAPLG00000008252
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008583
107289458 - 107311226
21769