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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_107289856_107301071_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
107289856 - 107301071
Intron Length:
11216

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGGCTG
5'SS Class:
major
3'SS Sequence:
ATTTTATTTATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TTATTCCTACTT
Flanking Amino Acid:
TFCEACKSTVGVDFKIKTVE
Intron Amino Acid Position:
83

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
1.1
64.3
47.1
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
83
0.74
0.8
77.8
35
Minor 5ss
33.9
-1.8
3.4
39.3
46
Minor BPS
53.9
0.2
1.9
76.93
39.9

Associated Gene:

Gene:
RAB12
Ensembl Gene ID:
ENSAPLG00000008252
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028333
107289458 - 107310976
21519