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Intron Name: Anas_platyrhynchos_platyrhynchos_2_107308603_107309142_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

107308603 - 107309142

Intron Length:

540

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAGGCTCT

5'SS Class:

strong_major

3'SS Sequence:

GTTTTCCTTGCAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CATTTAT

U12 Branch Point Sequence:

GTCTAGTTAACT

Flanking Amino Acid:

LPKWMKMIDKYASEDAELLL

Intron Amino Acid Position:

218

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.6

0.72

72.3

40.1

Major BPS

76.3

0.65

67.3

39.3

Major PPT

87.1

0.83

0.7

81.4

30.6

Minor 5ss

45.1

-0.5

3.2

65.3

46.1

Minor BPS

56.1

0.27

2.3

77.67

44.4

Associated Gene:

Gene:

RAB12

Ensembl Gene ID:

ENSAPLG00000008252

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000028333

107289458 - 107310976

21519

ENSAPLT00000018376

107289458 - 107310976

21519

ENSAPLT00000008583

107289458 - 107311226

21769