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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_107309233_107310197_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
107309233 - 107310197
Intron Length:
965

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAACA
5'SS Class:
strong_major
3'SS Sequence:
TCTCTTCCATCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACCTTAT
U12 Branch Point Sequence:
GTTACCTTATTT
Flanking Amino Acid:
REISRQQGEKFAQQITGMRF
Intron Amino Acid Position:
248

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
0.99
0.8
83.4
27.8
Major BPS
70
0.5
1
59.6
38.6
Major PPT
78.8
0.65
0.8
78.4
28.9
Minor 5ss
33.8
-1.9
2.9
41.4
44.7
Minor BPS
66.9
0.61
1.6
81.7
39.8

Associated Gene:

Gene:
RAB12
Ensembl Gene ID:
ENSAPLG00000008252
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028333
107289458 - 107310976
21519
ENSAPLT00000018376
107289458 - 107310976
21519
ENSAPLT00000008583
107289458 - 107311226
21769