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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_107310303_107310823_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
107310303 - 107310823
Intron Length:
521

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAATAC
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTCTTTAAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACAGAT
U12 Branch Point Sequence:
CTTTTCTTTAAG
Flanking Amino Acid:
LKLVDDILKKMPLDVIRNEL
Intron Amino Acid Position:
283

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
0.9
74.5
29.8
Major BPS
66.3
0.41
1
61
37.5
Major PPT
82
0.72
0.9
86.9
24.3
Minor 5ss
37.6
-1.4
3.2
49.9
46.6
Minor BPS
55.4
0.02
1.9
63.92
43.8

Associated Gene:

Gene:
RAB12
Ensembl Gene ID:
ENSAPLG00000008252
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028333
107289458 - 107310976
21519
ENSAPLT00000018376
107289458 - 107310976
21519
ENSAPLT00000008583
107289458 - 107311226
21769