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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_107340133_107350685_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
107340133 - 107350685
Intron Length:
10553

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGTGAG
5'SS Class:
strong_major
3'SS Sequence:
TCACTTTTCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
ACTGTTTTCACT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.6
0.72
1
68.4
38.7
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
80.1
0.68
0.8
75.3
32.9
Minor 5ss
25.2
-2.9
3.2
30
43.6
Minor BPS
50.5
0.1
1.8
68.73
43.1

Associated Gene:

Gene:
MTCL1
Ensembl Gene ID:
ENSAPLG00000008150
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020596
107339756 - 107442721
102966
ENSAPLT00000018225
107339756 - 107442721
102966
ENSAPLT00000008480
107339756 - 107436326
96571
ENSAPLT00000036783
107339756 - 107442721
102966
ENSAPLT00000032767
107339756 - 107442721
102966