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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_10734_16020_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10734 - 16020
Intron Length:
5287

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCTGA
5'SS Class:
strong_major
3'SS Sequence:
ATCCTCTCCATAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
GTTTTCACAATC
Flanking Amino Acid:
PDPIVINHIISVDPNDQKKT
Intron Amino Acid Position:
394

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.8
0.91
0.9
75
38.1
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
70.8
0.47
0.8
65.3
29.8
Minor 5ss
43.2
-0.7
2.9
56.2
47.9
Minor BPS
52.9
0.07
1.8
68.18
37.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008538
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019825
3263 - 59790
56528
ENSAPLT00000018278
3263 - 59790
56528
ENSAPLT00000008903
3822 - 61680
57859
ENSAPLT00000046030
3263 - 59790
56528
ENSAPLT00000020394
3263 - 88619
85357