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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_107350911_107352404_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
107350911 - 107352404
Intron Length:
1494

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGTGAG
5'SS Class:
strong_major
3'SS Sequence:
CTTCTCTGACCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTCAT
U12 Branch Point Sequence:
CTTCTCTGACCA
Flanking Amino Acid:
LIRSLEQDLKVAKDVSVRLH
Intron Amino Acid Position:
67

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.9
0.82
1
72.3
39.5
Major BPS
82.3
0.8
0.9
81.8
30.8
Major PPT
71.9
0.49
1
66.1
39.6
Minor 5ss
30.6
-2.2
3.4
39.1
46.7
Minor BPS
50.5
0.01
1.8
65.1
41.3

Associated Gene:

Gene:
MTCL1
Ensembl Gene ID:
ENSAPLG00000008150
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018225
107339756 - 107442721
102966
ENSAPLT00000039829
107350656 - 107442721
92066
ENSAPLT00000008480
107339756 - 107436326
96571
ENSAPLT00000036783
107339756 - 107442721
102966
ENSAPLT00000032767
107339756 - 107442721
102966
ENSAPLT00000020596
107339756 - 107442721
102966
ENSAPLT00000047143
107350656 - 107442721
92066