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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_107352564_107390251_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
107352564 - 107390251
Intron Length:
37688

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGCAAT
5'SS Class:
strong_major
3'SS Sequence:
ACTTCTGTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATCAA
U12 Branch Point Sequence:
TTATCAATAACC
Flanking Amino Acid:
LQNELDKLKESSLKRRGSRE
Intron Amino Acid Position:
120

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92
0.99
0.8
87
30
Major BPS
79
0.72
1
80.3
31.7
Major PPT
80.1
0.68
0.9
76.9
36.6
Minor 5ss
41
-1
2.9
56.9
47.4
Minor BPS
63
0.39
1.9
78.13
36.5

Associated Gene:

Gene:
MTCL1
Ensembl Gene ID:
ENSAPLG00000008150
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020596
107339756 - 107442721
102966
ENSAPLT00000047143
107350656 - 107442721
92066
ENSAPLT00000018225
107339756 - 107442721
102966
ENSAPLT00000039829
107350656 - 107442721
92066
ENSAPLT00000008480
107339756 - 107436326
96571
ENSAPLT00000036783
107339756 - 107442721
102966
ENSAPLT00000032767
107339756 - 107442721
102966