Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_10736365_10736565_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

10736365 - 10736565

Intron Length:

201

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TGA|GTGCGTTTG

5'SS Class:

major

3'SS Sequence:

AGCTGCAGAAAAG|T

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TCTTGAA

U12 Branch Point Sequence:

AGCTGCAGAAAA

Flanking Amino Acid:

VNGAAGIAGTDEEKKDGVIK

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

62.9

0.3

1.1

59.7

Major BPS

74.6

0.61

65.6

41.4

Major PPT

45.9

-0.2

1.1

38.7

37.4

Minor 5ss

38.6

-1.3

3.1

44.9

44.2

Minor BPS

-0.6

2.1

50.02

40.3

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000026799

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000022248

10736165 - 10739566

3402