About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_107390312_107392371_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
107390312 - 107392371
Intron Length:
2060

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTATTCAGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTATTCAGCA
Flanking Amino Acid:
MHKEKKTLTQNCKVELLGKY
Intron Amino Acid Position:
140

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.5
0.93
0.9
88.1
28.7
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
81.7
0.71
0.9
78.7
34.2
Minor 5ss
45.1
-0.5
3.1
67
44.3
Minor BPS
52.8
0.08
1.9
72.78
39.1

Associated Gene:

Gene:
MTCL1
Ensembl Gene ID:
ENSAPLG00000008150
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032767
107339756 - 107442721
102966
ENSAPLT00000020992
107389807 - 107442721
52915
ENSAPLT00000018225
107339756 - 107442721
102966
ENSAPLT00000047143
107350656 - 107442721
92066
ENSAPLT00000008480
107339756 - 107436326
96571
ENSAPLT00000039829
107350656 - 107442721
92066