About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_107393110_107396289_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
107393110 - 107396289
Intron Length:
3180

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAAGACT
5'SS Class:
major
3'SS Sequence:
TTGTTCTTGGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
TTGTTCTTGGCA
Flanking Amino Acid:
DLSLLFLQNEEDSADLKCQL
Intron Amino Acid Position:
32

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.1
0.52
1
72.2
37.1
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
79.4
0.66
1
77.1
37.1
Minor 5ss
36
-1.6
3.3
49.8
40.7
Minor BPS
47.2
-0.2
3.5
73.38
39

Associated Gene:

Gene:
MTCL1
Ensembl Gene ID:
ENSAPLG00000008150
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030050
107392978 - 107442721
49744