Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_107397616_107406831_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

107397616 - 107406831

Intron Length:

9216

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAGGTTGA

5'SS Class:

strong_major

3'SS Sequence:

TTTACCTGTACAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGCTGAT

U12 Branch Point Sequence:

TTTACCTGTACA

Flanking Amino Acid:

LGKELITDFQSVSIQELQAQ

Intron Amino Acid Position:

478

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.6

0.84

38.1

Major BPS

76.2

0.65

1.1

65.3

43.7

Major PPT

78.3

0.64

0.9

72.6

37.5

Minor 5ss

38.2

-1.3

3.1

49.4

46.8

Minor BPS

61.6

0.36

1.9

77.51

38.6

Associated Gene:

Gene:

MTCL1

Ensembl Gene ID:

ENSAPLG00000008150

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000020992

107389807 - 107442721

52915