Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_107412219_107418482_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

107412219 - 107418482

Intron Length:

6264

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTACCATAC

5'SS Class:

major

3'SS Sequence:

TTTGTTCTGGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATGACAA

U12 Branch Point Sequence:

CACCCGATGACA

Flanking Amino Acid:

TAELLQQQKQASENRKLLNA

Intron Amino Acid Position:

830

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

68.4

0.43

1.2

63.2

38.4

Major BPS

49.8

-0

1.1

58.8

38.1

Major PPT

0.67

77.3

Minor 5ss

42.7

-0.8

3.2

59.1

45.6

Minor BPS

41.9

-0.6

2.2

49.62

41.2

Associated Gene:

Gene:

MTCL1

Ensembl Gene ID:

ENSAPLG00000008150

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000008480

107339756 - 107436326

96571

ENSAPLT00000030050

107392978 - 107442721

49744

ENSAPLT00000047143

107350656 - 107442721

92066

ENSAPLT00000020992

107389807 - 107442721

52915

ENSAPLT00000039829

107350656 - 107442721

92066

ENSAPLT00000020596

107339756 - 107442721

102966

ENSAPLT00000036783

107339756 - 107442721

102966

ENSAPLT00000018225

107339756 - 107442721

102966

ENSAPLT00000032767

107339756 - 107442721

102966