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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_10741563_10745617_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
10741563 - 10745617
Intron Length:
4055

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGAATA
5'SS Class:
strong_major
3'SS Sequence:
TCTCCCAACAGAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TCCTCAT
U12 Branch Point Sequence:
GTATCCTCATTT
Flanking Amino Acid:
PDQPPDSCKEENLASDMYLI
Intron Amino Acid Position:
38

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86
0.85
0.9
82.5
29.7
Major BPS
82.3
0.8
0.9
81.8
30.8
Major PPT
48.4
-0
1.7
54.3
34.2
Minor 5ss
43.1
-0.8
2.9
57.4
46.9
Minor BPS
56.4
0.28
1.8
74.23
42.5

Associated Gene:

Gene:
LARP4B
Ensembl Gene ID:
ENSAPLG00000003813
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003940
10741451 - 10752890
11440