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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_107425490_107429700_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
107425490 - 107429700
Intron Length:
4211

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGAGT
5'SS Class:
strong_major
3'SS Sequence:
GCCTTGTTTTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GAATAAT
U12 Branch Point Sequence:
ATCCTTCCAACT
Flanking Amino Acid:
KKELLRRIEQLQKEVSPRRG
Intron Amino Acid Position:
971

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91
0.97
0.8
82.5
37
Major BPS
62.3
0.31
1.3
64.3
39.7
Major PPT
79.2
0.66
0.9
75.9
38
Minor 5ss
34
-1.8
3.3
48.8
47
Minor BPS
46.2
-0.2
1.8
64.33
40.1

Associated Gene:

Gene:
MTCL1
Ensembl Gene ID:
ENSAPLG00000008150
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018225
107339756 - 107442721
102966
ENSAPLT00000032767
107339756 - 107442721
102966
ENSAPLT00000008480
107339756 - 107436326
96571
ENSAPLT00000030050
107392978 - 107442721
49744
ENSAPLT00000047143
107350656 - 107442721
92066
ENSAPLT00000020992
107389807 - 107442721
52915
ENSAPLT00000039829
107350656 - 107442721
92066
ENSAPLT00000020596
107339756 - 107442721
102966
ENSAPLT00000036783
107339756 - 107442721
102966