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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_107430007_107432629_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
107430007 - 107432629
Intron Length:
2623

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTATGCAAT
5'SS Class:
major
3'SS Sequence:
TGTTTTTCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCAGAA
U12 Branch Point Sequence:
AGGTTCAGAAAT
Flanking Amino Acid:
REKFFTGLTEEEETHKGNLQ
Intron Amino Acid Position:
1073

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.7
0.56
1
73.4
37.3
Major BPS
64.9
0.37
1
61
37.5
Major PPT
90.4
0.91
0.7
89
28.1
Minor 5ss
48.8
-0.1
2.6
66
39.5
Minor BPS
46.3
-0.2
1.8
62.43
40.8

Associated Gene:

Gene:
MTCL1
Ensembl Gene ID:
ENSAPLG00000008150
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020596
107339756 - 107442721
102966
ENSAPLT00000036783
107339756 - 107442721
102966
ENSAPLT00000018225
107339756 - 107442721
102966
ENSAPLT00000032767
107339756 - 107442721
102966
ENSAPLT00000008480
107339756 - 107436326
96571
ENSAPLT00000030050
107392978 - 107442721
49744
ENSAPLT00000047143
107350656 - 107442721
92066
ENSAPLT00000020992
107389807 - 107442721
52915
ENSAPLT00000039829
107350656 - 107442721
92066