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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_107439158_107442186_F

Intron Information:

Intron Rank:
16
Intron Class:
major-like
Intron Phase:
3UTR
Intron Coordinates:
107439158 - 107442186
Intron Length:
3029

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTAAGTCCT
5'SS Class:
major
3'SS Sequence:
CTTGGCTGCCAAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
AATACAA
U12 Branch Point Sequence:
AAGTCACTAACC
Flanking Amino Acid:
3UTR
Intron Amino Acid Position:
3UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.1
0.57
1.1
68.7
42
Major BPS
57
0.17
0.9
65
30.8
Major PPT
54.7
0.11
1.1
51.9
41.9
Minor 5ss
39.8
-1.1
3.1
61.7
42.2
Minor BPS
51.6
0.03
1.9
64.52
40.2

Associated Gene:

Gene:
MTCL1
Ensembl Gene ID:
ENSAPLG00000008150
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018225
107339756 - 107442721
102966