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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_10744697_10745615_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10744697 - 10745615
Intron Length:
919

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTATGTATA
5'SS Class:
strong_major
3'SS Sequence:
CCTCTCCCAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTCAT
U12 Branch Point Sequence:
GTATCCTCATTT
Flanking Amino Acid:
LKKTLEFCLSRENLASDMYL
Intron Amino Acid Position:
23

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.9
0.96
0.8
88.8
25
Major BPS
82.3
0.8
0.9
81.8
30.8
Major PPT
71.2
0.48
0.8
65.8
28.7
Minor 5ss
45.4
-0.5
2.5
59.5
45.1
Minor BPS
56.4
0.28
1.8
74.23
42.5

Associated Gene:

Gene:
LARP4B
Ensembl Gene ID:
ENSAPLG00000003813
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038460
10744629 - 10749500
4872