Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_10745753_10746326_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

10745753 - 10746326

Intron Length:

574

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAT|GTAAGTAAA

5'SS Class:

strong_major

3'SS Sequence:

TTTCCTCTCTTAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AATACAT

U12 Branch Point Sequence:

GACAGCTAAAAT

Flanking Amino Acid:

DMDLIVEVLRSLPLVQVDEK

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.9

0.85

0.9

85.3

25.4

Major BPS

66.1

0.4

31.5

Major PPT

81.9

0.72

0.7

81.3

23.7

Minor 5ss

37.5

-1.4

2.8

46.9

41.8

Minor BPS

42.9

-0.4

2.1

55.89

45.6

Associated Gene:

Gene:

LARP4B

Ensembl Gene ID:

ENSAPLG00000003813

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000038460

10744629 - 10749500

4872

ENSAPLT00000003940

10741451 - 10752890

11440