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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_107458803_107475692_R

Intron Information:

Intron Rank:
139491
Intron Class:
major
Intron Phase:
Intron Coordinates:
107458803 - 107475692
Intron Length:
16890

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGTTGA
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTACCTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTTATAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.4
0.88
0.9
76.7
34.9
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
78.6
0.64
0.7
78.3
28.9
Minor 5ss
45.7
-0.5
2.5
58.5
46
Minor BPS
74.1
0.84
1.5
92.32
29.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022530
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018116
107458753 - 107478822
20070