Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_10746431_10748077_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

10746431 - 10748077

Intron Length:

1647

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAA|GTAAGTAAC

5'SS Class:

strong_major

3'SS Sequence:

CTGCTTTCCTTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCCTAC

U12 Branch Point Sequence:

CTTTTCCTACTG

Flanking Amino Acid:

REVPESTPIEEVEALFKGDN

Intron Amino Acid Position:

118

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

87.2

0.88

0.9

84.2

26.3

Major BPS

58.9

0.22

1.3

58.4

Major PPT

74.1

0.54

0.8

73.1

31.8

Minor 5ss

37.7

-1.4

2.7

46.1

36.1

Minor BPS

48.3

-0.2

58.92

43.6

Associated Gene:

Gene:

LARP4B

Ensembl Gene ID:

ENSAPLG00000003813

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000038460

10744629 - 10749500

4872

ENSAPLT00000003940

10741451 - 10752890

11440