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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_10749387_10752653_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10749387 - 10752653
Intron Length:
3267

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTCTC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATATAT
U12 Branch Point Sequence:
TGATATATATGT
Flanking Amino Acid:
TTHSYLDPALVTPFPNTGFI
Intron Amino Acid Position:
232

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.9
0.89
0.9
77.9
36.8
Major BPS
71.4
0.53
1
67.3
39.3
Major PPT
95.8
1.03
0.5
96.6
11.7
Minor 5ss
38.9
-1.2
3
50.6
40.1
Minor BPS
41.1
-0.5
2.1
59.5
43.4

Associated Gene:

Gene:
LARP4B
Ensembl Gene ID:
ENSAPLG00000003813
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003940
10741451 - 10752890
11440