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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_107533209_107536579_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
107533209 - 107536579
Intron Length:
3371

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
ACTTCTCTTGAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTATTAT
U12 Branch Point Sequence:
ATTTCTTTTACT
Flanking Amino Acid:
CSSSGGALFVHRDSPENNPD
Intron Amino Acid Position:
37

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91
0.97
0.8
88.8
25
Major BPS
72.4
0.56
1.1
63.7
42.3
Major PPT
71.8
0.49
1
72
32.3
Minor 5ss
37.5
-1.4
2.8
48.3
41.8
Minor BPS
75.8
0.89
1.5
90.35
33.1

Associated Gene:

Gene:
NDUFV2
Ensembl Gene ID:
ENSAPLG00000008082
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008407
107531012 - 107544134
13123