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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_107533209_107536730_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
107533209 - 107536730
Intron Length:
3522

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
TTCCTTTAAAAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTGAT
U12 Branch Point Sequence:
TTTCCTTTAAAA
Flanking Amino Acid:
CSSSGGALFVRIEAIINNYP
Intron Amino Acid Position:
37

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91
0.97
0.8
88.8
25
Major BPS
83.5
0.83
0.8
71.6
36.4
Major PPT
64.4
0.32
1.1
68
35.8
Minor 5ss
37.5
-1.4
2.8
48.3
41.8
Minor BPS
75.1
0.78
1.3
82.33
31.7

Associated Gene:

Gene:
NDUFV2
Ensembl Gene ID:
ENSAPLG00000008082
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028186
107531012 - 107544071
13060