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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_107538657_107540218_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
107538657 - 107540218
Intron Length:
1562

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTATGATAC
5'SS Class:
major
3'SS Sequence:
TATTTTTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
CATTGCTGAACC
Flanking Amino Acid:
SILEAIKKKLGIKVGETTPD
Intron Amino Acid Position:
153

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.7
0.61
1
66.5
33.3
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
89.4
0.89
0.7
89.2
27.3
Minor 5ss
44.5
-0.6
2.8
55.6
43.4
Minor BPS
57.2
0.2
1.9
68.47
42.8

Associated Gene:

Gene:
NDUFV2
Ensembl Gene ID:
ENSAPLG00000008082
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028186
107531012 - 107544071
13060
ENSAPLT00000018418
107495489 - 107540529
45041
ENSAPLT00000008407
107531012 - 107544134
13123