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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_107540329_107543030_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
107540329 - 107543030
Intron Length:
2702

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAT|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
CTTATTTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TTTTACTTATTT
Flanking Amino Acid:
PMVQINDNYYEDLTPKDIEE
Intron Amino Acid Position:
190

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.9
92.9
22.2
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
85.6
0.8
0.7
84.7
30
Minor 5ss
44.1
-0.6
2.9
65.1
39.1
Minor BPS
69.6
0.69
1.7
89
35.8

Associated Gene:

Gene:
NDUFV2
Ensembl Gene ID:
ENSAPLG00000008082
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028186
107531012 - 107544071
13060
ENSAPLT00000008407
107531012 - 107544134
13123