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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_107543108_107543957_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
107543108 - 107543957
Intron Length:
850

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGCTGT
5'SS Class:
strong_major
3'SS Sequence:
TGTCATTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATAAC
U12 Branch Point Sequence:
TCTGCTGTCATT
Flanking Amino Acid:
KAGKVPKPGPRSGRFSCEPA
Intron Amino Acid Position:
215

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.75
1
71.4
41.2
Major BPS
77.9
0.69
1
78.3
31.3
Major PPT
83.7
0.76
0.8
80.8
36.5
Minor 5ss
55.9
0.2
2.5
73.6
43
Minor BPS
44.6
-0.3
2.4
66.31
45.7

Associated Gene:

Gene:
NDUFV2
Ensembl Gene ID:
ENSAPLG00000008082
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028186
107531012 - 107544071
13060
ENSAPLT00000008407
107531012 - 107544134
13123