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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_107568609_107569802_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
107568609 - 107569802
Intron Length:
1194

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATAAAA
5'SS Class:
strong_major
3'SS Sequence:
TGTTCTTCTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
GTGTATTTATTT
Flanking Amino Acid:
TMVEKPTARKHIVKLTEILG
Intron Amino Acid Position:
30

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
0.9
78.8
29.6
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
83
0.74
0.7
81.8
30.3
Minor 5ss
32.9
-2
2.9
40.3
45.4
Minor BPS
51.7
0.13
1.8
69.25
42.2

Associated Gene:

Gene:
ANKRD12
Ensembl Gene ID:
ENSAPLG00000024129
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039468
107568471 - 107599309
30839