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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_107586145_107587894_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
107586145 - 107587894
Intron Length:
1750

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGATCTTA
5'SS Class:
major
3'SS Sequence:
ATTTATTTTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
CATTTAAAAATT
Flanking Amino Acid:
MQMTARDNSPDSNLNHSLQT
Intron Amino Acid Position:
128

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.9
0.63
1
73
34.2
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
82.7
0.74
0.8
78
35.5
Minor 5ss
42.1
-0.9
3
55.8
48.3
Minor BPS
43.7
-0.4
2
62.53
41.8

Associated Gene:

Gene:
ANKRD12
Ensembl Gene ID:
ENSAPLG00000024129
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029914
107568471 - 107612293
43823
ENSAPLT00000039468
107568471 - 107599309
30839