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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_107590987_107592278_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
107590987 - 107592278
Intron Length:
1292

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTGAGTGTG
5'SS Class:
major
3'SS Sequence:
TTTAATGCTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TTCTATTTAATG
Flanking Amino Acid:
HDSASSGHRNIVKLLLRHGG
Intron Amino Acid Position:
242

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
74.3
36.2
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
72.4
0.5
0.9
66.6
40.2
Minor 5ss
33.3
-1.9
3.4
44.7
43.5
Minor BPS
65
0.33
1.6
67.74
40.6

Associated Gene:

Gene:
ANKRD12
Ensembl Gene ID:
ENSAPLG00000024129
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039468
107568471 - 107599309
30839
ENSAPLT00000029914
107568471 - 107612293
43823