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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_107592427_107594543_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
107592427 - 107594543
Intron Length:
2117

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAAGTA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCCATCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTAAT
U12 Branch Point Sequence:
TTTTCTCCATCT
Flanking Amino Acid:
PISDDEDSCSESEEAPSVNL
Intron Amino Acid Position:
291

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.1
0.78
0.9
77.6
30.5
Major BPS
77.9
0.69
0.8
75.9
25
Major PPT
77.8
0.63
0.8
71
34.9
Minor 5ss
33.4
-1.9
3.6
46.9
48.4
Minor BPS
51.2
0.12
2.1
80.99
40.7

Associated Gene:

Gene:
ANKRD12
Ensembl Gene ID:
ENSAPLG00000024129
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039468
107568471 - 107599309
30839
ENSAPLT00000029914
107568471 - 107612293
43823