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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_107599217_107605310_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
107599217 - 107605310
Intron Length:
6094

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTAAGTAAC
5'SS Class:
major
3'SS Sequence:
ACTTTTTCCATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TATTTATGAAAC
Flanking Amino Acid:
NPLSKICIPTITPPPSLSDP
Intron Amino Acid Position:
1849

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.1
0.62
1.1
74.7
35.4
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
77.4
0.62
0.8
73
31.3
Minor 5ss
38.9
-1.2
2.8
55.7
41.6
Minor BPS
51.5
0.03
1.8
67.19
37.3

Associated Gene:

Gene:
ANKRD12
Ensembl Gene ID:
ENSAPLG00000024129
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029914
107568471 - 107612293
43823