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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_107607622_107610486_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
107607622 - 107610486
Intron Length:
2865

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGAGA
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTTTGACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATCAA
U12 Branch Point Sequence:
TTGTTTTTGACA
Flanking Amino Acid:
EVYNVPLDAQADDSKTSVRD
Intron Amino Acid Position:
1930

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.6
0.72
1
72
39.3
Major BPS
79
0.72
1
80.3
31.7
Major PPT
82
0.72
1
79.9
37.7
Minor 5ss
31
-2.2
3.2
40
45.7
Minor BPS
72.3
0.7
1.1
77.15
33.9

Associated Gene:

Gene:
ANKRD12
Ensembl Gene ID:
ENSAPLG00000024129
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029914
107568471 - 107612293
43823