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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_107610583_107610985_F

Intron Information:

Intron Rank:
10
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
107610583 - 107610985
Intron Length:
403

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATACATC
5'SS Class:
major
3'SS Sequence:
AATTTCAAAATAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
TTCTTTCTAATT
Flanking Amino Acid:
DVDDKFDKLKTCLLMRQQHE
Intron Amino Acid Position:
1962

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.2
0.57
1
71.2
38.9
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
58.5
0.19
1
53.8
39.7
Minor 5ss
49.4
-0
2.6
68.8
42.2
Minor BPS
62.4
0.47
1.6
79.49
37.4

Associated Gene:

Gene:
ANKRD12
Ensembl Gene ID:
ENSAPLG00000024129
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029914
107568471 - 107612293
43823