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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_10761785_10762081_R

Intron Information:

Intron Rank:
137052
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
10761785 - 10762081
Intron Length:
297

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAATGCAA
5'SS Class:
major
3'SS Sequence:
GTTGGAAGGGTAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ACTTGAT
U12 Branch Point Sequence:
ACTTGATTGATG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.9
0.45
1.1
58.6
42
Major BPS
75
0.62
1
65.3
41.5
Major PPT
48.5
-0
1.1
40.8
43.1
Minor 5ss
29.7
-2.3
3.2
30.2
42.9
Minor BPS
46.4
-0.4
2.1
53.39
42

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021235
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044980
10760778 - 10762237
1460