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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_107657137_107658108_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
107657137 - 107658108
Intron Length:
972

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGTGCA
5'SS Class:
strong_major
3'SS Sequence:
TCTTTCTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
GTGTTCTTAACC
Flanking Amino Acid:
ISIVLSPTVQISNRVLYVFF
Intron Amino Acid Position:
352

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.9
75.2
34.9
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
92.4
0.95
0.6
88.1
21.7
Minor 5ss
31.9
-2.1
3.3
41.7
44.9
Minor BPS
78.4
0.87
1.1
78.7
36.7

Associated Gene:

Gene:
RALBP1
Ensembl Gene ID:
ENSAPLG00000007469
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007774
107647647 - 107660595
12949