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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_107660042_107660453_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
107660042 - 107660453
Intron Length:
412

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAAGGC
5'SS Class:
major
3'SS Sequence:
CTTGCTCTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCAAT
U12 Branch Point Sequence:
AGCGTTTCAATC
Flanking Amino Acid:
RLRAEIAEIQSRQQHGRSET
Intron Amino Acid Position:
526

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.71
1
66.6
37.7
Major BPS
76.9
0.67
1.2
85
31.9
Major PPT
83.9
0.76
0.8
80.8
31.2
Minor 5ss
30.1
-2.3
3.4
41.8
45
Minor BPS
46
-0.3
1.5
48.49
36

Associated Gene:

Gene:
RALBP1
Ensembl Gene ID:
ENSAPLG00000007469
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007774
107647647 - 107660595
12949