About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_107660994_107661044_R

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
107660994 - 107661044
Intron Length:
51

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
TTG|GCTGCTCTT
5'SS Class:
weak_major
3'SS Sequence:
CTGGGCTGCTGAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TCTCCAG
U12 Branch Point Sequence:
GTCTCCAGGACA
Flanking Amino Acid:
GLTCCSLLAFETPPRFSASS
Intron Amino Acid Position:
41

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
53
0.07
1.4
59.5
44.9
Major BPS
46.3
-0.2
1.7
60.4
45.8
Major PPT
45.6
-0.2
1.7
49.6
43.9
Minor 5ss
30.5
-2.2
4.2
47.5
42.6
Minor BPS
50.8
0.02
1.8
65.33
40.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024125
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022731
107660878 - 107665836
4959