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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_107667062_107668070_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
107667062 - 107668070
Intron Length:
1009

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTAGTGGT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTCTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTATAAG
U12 Branch Point Sequence:
CCTCCTATAAGT
Flanking Amino Acid:
KTLKQTLLEKEYFLNSANSH
Intron Amino Acid Position:
883

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.4
0.79
1.1
77.3
37.8
Major BPS
51.5
0.04
1.6
61.7
41.5
Major PPT
88.2
0.86
0.6
81.7
30.3
Minor 5ss
30.8
-2.2
3.1
41.8
44.7
Minor BPS
48.2
-0
1.9
65.67
45.1

Associated Gene:

Gene:
PPP4R1
Ensembl Gene ID:
ENSAPLG00000007154
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041614
107666898 - 107721163
54266
ENSAPLT00000040872
107666017 - 107721163
55147
ENSAPLT00000019693
107666017 - 107721163
55147
ENSAPLT00000007441
107665547 - 107708202
42656