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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_107668213_107669207_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
107668213 - 107669207
Intron Length:
995

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAAACGT
5'SS Class:
major
3'SS Sequence:
GTCTCCTTGCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTAAT
U12 Branch Point Sequence:
ATCTAATGAAAT
Flanking Amino Acid:
GRQTFVFICQTISEDDCLPM
Intron Amino Acid Position:
836

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.9
0.61
1
64.9
41
Major BPS
85.7
0.89
0.8
84
22.2
Major PPT
71.9
0.49
1
65.2
41.2
Minor 5ss
27.6
-2.6
3.2
39.3
45.9
Minor BPS
46.8
-0.1
1.9
67.41
42.3

Associated Gene:

Gene:
PPP4R1
Ensembl Gene ID:
ENSAPLG00000007154
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040872
107666017 - 107721163
55147
ENSAPLT00000019693
107666017 - 107721163
55147
ENSAPLT00000007441
107665547 - 107708202
42656
ENSAPLT00000041614
107666898 - 107721163
54266