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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_107669343_107669438_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
107669343 - 107669438
Intron Length:
96

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAAGTAA
5'SS Class:
major
3'SS Sequence:
CCATTTCTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAATAAA
U12 Branch Point Sequence:
TCCTTCCCATTT
Flanking Amino Acid:
SSVRWISYKLVSEMVKKLYM
Intron Amino Acid Position:
791

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.5
0.55
1
67
34.3
Major BPS
62
0.3
1
62.3
30.4
Major PPT
77
0.61
0.8
69.4
36.6
Minor 5ss
35.5
-1.6
3.4
43
46.5
Minor BPS
43.2
-0.4
2
59.83
44.3

Associated Gene:

Gene:
PPP4R1
Ensembl Gene ID:
ENSAPLG00000007154
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041614
107666898 - 107721163
54266
ENSAPLT00000040872
107666017 - 107721163
55147
ENSAPLT00000019693
107666017 - 107721163
55147
ENSAPLT00000007441
107665547 - 107708202
42656